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FAQs

Answer1

Sequence based prediction is available on the home page and the search page There are two types of predictions: 1. With replacement at a fixed position, eg. P0DTC2/P681H 2. Entering a sequence format for replacement at a fixed position: P0DTC2/P681H format for arbitrary sequence search: give an identifier (eg. P0DTC2_del) and pass the sequence in the next row all identifiers should start with a greater than sign (>) Clicking on example button fills-in a sample input for both types of predictions We save the prediction results for two weeks. So, if you're running a prediction that someone has already run over the last two weeks, the results will be picked-up from history instead of computing, making the execution quick

  • Sequence based prediction is available on the home page and the search page
  • There are two types of predictions:
    • 1. With replacement at a fixed position, eg. P0DTC2/P681H
    2. Entering a sequence
  • format for replacement at a fixed position: P0DTC2/P681H
  • format for arbitrary sequence search: give an identifier (eg. P0DTC2_del) and pass the sequence in the next row
  • all identifiers should start with a greater than sign (>)
  • Clicking on example button fills-in a sample input for both types of predictions
  • We save the prediction results for two weeks. So, if you're running a prediction that someone has already run over the last two weeks, the results will be picked-up from history instead of computing, making the execution quick

    • Answer4

    Answer 5

    Answer 6



    Visualizations

    Sequence-Feature-Structure Visualization

    Hovering over the features in Protvista (below) leads to their highlighting in 3D structure.



    Sequence Viewer

    Sequence Viewer


    Interaction Networks

       Help Instructions

    • The interaction graph helps in visualizing the interactions between different entities
    • The user can filter the graph based upon defferent criteria using the "Filter Graph panel"
    • The filtered graph can be downloaded in PNG,SVG, CSV and JSON formats



    Sunbursts

       Help Instructions

    • Hovering on the arcs will display the type and name of the entity on a tooltip
    • Click in the arc to zoom-in into that arc
    • Click within inner circle to zoom-out
    • Click on "Open Sunburst in a new window" to view it in full screen mode
    • Help instrutions are provided along with each sunburst diagram