S | Spike glycoprotein
 
              DARK BACKGROUND

Hovering over the features in Protvista (below) leads to their highlighting in 3D structure.

Sequence Viewer
Gene
Protein Name
Spike glycoprotein
UniProt ID
P0DTC2 [go to UniProt ] [go to PDBe-KB ]
NCBI Gene ID
Molecular Weight
141178
Protein Length
1273
Protein Domain
3D Structure
(PDB ID : 6zb4)
Target by Small Molecules
Protein-protein Interaction Database
Gene Expression
Drugs and Diseases
Catalytic Site
Localization
Virion membrane,Host endoplasmic reticulum-Golgi intermediate compartment membrane,Host cell membrane;
Function
attaches the virion to the cell membrane by interacting with host receptor, initiating the infection. Binding to human ACE2 receptor and internalization of the virus into the endosomes of the host cell induces conformational chang...es in the Spike glycoprotein (PubMed:32142651, PubMed:32075877, PubMed:32155444). Binding to host NRP1 and NRP2 via C-terminal polybasic sequence enhances virion entry into host cell (PubMed:33082294, PubMed:33082293). This interaction may explain virus tropism of human olfactory epithelium cells, which express high level of NRP1 and NRP2 but low level of ACE2 (PubMed:33082293). The stalk domain of S contains three hinges, giving the head unexpected orientational freedom (PubMed:32817270). Uses human TMPRSS2 for priming in human lung cells which is an essential step for viral entry (PubMed:32142651). Can be alternatively processed by host furin (PubMed:32362314). Proteolysis by cathepsin CTSL may unmask the fusion peptide of S2 and activate membranes fusion within endosomes.mediates fusion of the virion and cellular membranes by acting as a class I viral fusion protein. Under the current model, the protein has at least three conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes.Acts as a viral fusion peptide which is unmasked following S2 cleavage occurring upon virus endocytosis.May down-regulate host tetherin (BST2) by lysosomal degradation, thereby counteracting its antiviral activity. (+)

Gene Ontology

ID Name
GO:0075509 endocytosis involved in viral entry into host cell
GO:0039654 fusion of virus membrane with host endosome membrane
GO:0019064 fusion of virus membrane with host plasma membrane
GO:0009405 pathogenesis
GO:0046813 receptor-mediated virion attachment to host cell
GO:0039587 suppression by virus of host tetherin activity
GO:0039502 suppression by virus of host type I interferon-mediated signaling pathway
GO:0046718 viral entry into host cell
ID Name
GO:0044173 host cell endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0020002 host cell plasma membrane
GO:0016021 integral component of membrane
GO:0019031 viral envelope
GO:0055036 virion membrane
ID Name
GO:0046789 host cell surface receptor binding
GO:0042802 identical protein binding